SRR1780271_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780271_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394458
Sequences flagged as poor quality	0
Sequence length	50
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGT	17284	4.381708572268784	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	5178	1.3126872822962141	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCG	4514	1.1443550390662631	No Hit
CACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTTCTG	3756	0.9521926288730359	Illumina PCR Primer Index 1 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	1023	0.2593432000365058	No Hit
ATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTT	483	0.12244649620491915	Illumina PCR Primer Index 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAGAT	25	4.4326778E-5	44.008114	3
GGTCCAA	30	2.5246754E-6	43.996956	11
TCTTCTG	470	0.0	39.31643	44
GTCTTCT	495	0.0	37.330753	43
TAGATTG	30	1.300075E-4	36.66413	5
TCAGTTA	30	1.300075E-4	36.66413	33
TCTTTAT	105	0.0	35.698036	1
CGTCTTC	520	0.0	35.536003	42
CCGTCTT	525	0.0	35.197567	41
ATGCCGT	2380	0.0	32.16584	44
GCCGTCT	585	0.0	31.587559	40
CAGTTAT	35	3.215266E-4	31.4264	34
AGTTATA	35	3.215266E-4	31.4264	35
TGATAGA	50	2.3527427E-6	30.80568	2
TGTAGGG	30	0.0057423236	29.331303	5
ATAGATT	40	7.0161093E-4	27.505072	4
TGCCGTC	710	0.0	26.336206	39
TATGCCG	3015	0.0	25.537207	43
AGATTGG	45	0.0013971091	24.442755	6
TTAATAC	55	1.588976E-4	24.004427	2