SRR1780270_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780270_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66305
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	7838	11.821129628233166	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	1941	2.9273810421536837	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1907	2.8761028580046757	No Hit
CACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTTCTG	1852	2.7931528542342208	RNA PCR Primer, Index 47 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	458	0.6907473041248774	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	250	0.3770454716838851	Illumina PCR Primer Index 9 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	241	0.3634718347032652	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	134	0.2020963728225624	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	123	0.18550637206847145	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	84	0.1266872784857854	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	74	0.11160545961842999	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCG	74	0.11160545961842999	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	72	0.10858909584495889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	80	0.0	61.25	1
TTTATAC	100	0.0	55.999996	3
CTTTATA	90	0.0	54.444443	2
TCCATGC	20	0.006923323	52.5	33
AGTCCGA	20	0.006923323	52.5	17
AAAAGAC	20	0.006923323	52.5	69
GGACAAG	20	0.006923323	52.5	1
GCCGCCA	35	0.0012472312	40.0	35
ACTCGTA	35	0.0012472312	40.0	38
AACTCGT	35	0.0012472312	40.0	37
CTGCTTG	1700	0.0	35.617645	54
TCTGCTT	1705	0.0	35.5132	53
TCTTCTG	1705	0.0	35.30792	50
TTCTGCT	1720	0.0	35.203487	52
TGCTTGA	1705	0.0	35.10264	55
GTCTTCT	1715	0.0	35.10204	49
CGTCTTC	1725	0.0	35.10145	48
TCGTATG	1735	0.0	35.100864	40
CGTATGC	1730	0.0	35.0	41
CTCGTAT	1730	0.0	35.0	39