SRR1780261_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780261_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	340711
Sequences flagged as poor quality	0
Sequence length	50
%GC	65

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT	23774	6.977761211114405	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	6660	1.9547358318340178	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG	5788	1.698800449647942	No Hit
CACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTTCTG	4793	1.4067640903874543	Illumina PCR Primer Index 2 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	1459	0.4282221589558306	No Hit
ATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTT	650	0.19077752112494167	Illumina PCR Primer Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACACA	20	7.851898E-4	43.99633	7
TCTTTAT	145	0.0	41.034363	1
CTTTATA	155	0.0	38.32501	2
GTCTTCT	605	0.0	37.45692	43
TCTTCTG	600	0.0	37.40237	44
CGTCTTC	635	0.0	35.6873	42
TCTTAAT	50	5.8376827E-8	35.259155	1
TTTATAC	200	0.0	34.102158	3
CCGTCTT	680	0.0	33.32564	41
ATGCCGT	3200	0.0	32.452053	44
CTACAGC	35	3.211855E-4	31.430565	4
CCTTATA	30	0.00569238	29.382631	1
GAGATAG	30	0.005737521	29.335192	40
GGCACTT	30	0.005741639	29.330887	5
GCCGTCT	820	0.0	27.635899	40
TATGCCG	3810	0.0	27.371815	43
TTAATAC	90	1.5033947E-8	24.445993	2
TTTTATA	45	0.0013956402	24.445993	2
TGCCGTC	930	0.0	24.367134	39
ACACATC	4480	0.0	23.52036	6