SRR1780259_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780259_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	649090
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT	23680	3.6481843812106183	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	6407	0.9870742115885317	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG	6207	0.9562618435039826	No Hit
CACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTCTTCTG	4753	0.7322559275293102	TruSeq Adapter, Index 9 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	1321	0.20351569119844704	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATATCGTATGCCGT	930	0.1432775115931535	No Hit
ATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTCTT	657	0.10121862915774393	TruSeq Adapter, Index 9 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTCTG	655	0.0	37.618584	44
GTCTTCT	695	0.0	35.453484	43
CGTCTTC	710	0.0	35.01433	42
CCGTCTT	710	0.0	35.01433	41
CTTTATA	220	0.0	32.005157	2
ATGCCGT	3420	0.0	31.842329	44
GCCGTCT	795	0.0	30.993927	40
TCTTTAT	230	0.0	30.65378	1
ATACTCG	30	0.005745045	29.331278	26
TAAGCAA	30	0.005745045	29.331278	12
CACGCTA	80	4.311005E-9	27.498075	23
TATGCCG	4005	0.0	27.355997	43
TTTATAC	295	0.0	26.851782	3
TGCCGTC	1005	0.0	24.9554	39
CTTATAA	45	0.0013855834	24.480448	1
TATTGCG	45	0.0013980877	24.442732	11
GTGCAAA	55	1.5932664E-4	23.998322	11
TCTGTAC	50	0.00257675	22.003546	3
TGTATAA	90	4.0694613E-7	22.003542	2
TGCTAGC	50	0.002580211	21.99846	11