SRR1780256_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780256_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	171054
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	8131	4.753469664550376	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	2321	1.3568814526406867	No Hit
CACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTTCTG	2207	1.2902358319594982	TruSeq Adapter, Index 2 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2102	1.2288517076478773	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	505	0.29522840740351	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	276	0.16135255533340348	TruSeq Adapter, Index 2 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	180	0.1052299273913501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTTAA	15	0.0022216595	70.0	21
TCGGCTA	25	2.3852682E-4	55.999996	26
CCTTTAT	20	0.0069419765	52.5	62
CTTTATA	115	0.0	48.695652	2
TGTATTC	30	5.8653025E-4	46.666664	21
TAGGGCG	30	5.8653025E-4	46.666664	40
TCTTTAT	120	0.0	46.666664	1
TTTATAC	140	0.0	42.5	3
TAATACG	35	0.0012527752	40.0	4
CGTATTC	35	0.0012527752	40.0	60
GAATATG	35	0.0012527752	40.0	1
CGGCTAT	35	0.0012527752	40.0	27
TAGTGAA	35	0.0012527752	40.0	9
TTCGGCT	45	9.169089E-5	38.88889	25
TAGACAT	40	0.0024137006	35.0	5
ATAATGT	40	0.0024137006	35.0	11
ATTCGGC	40	0.0024137006	35.0	24
TTACTCG	40	0.0024137006	35.0	19
TATTCGG	40	0.0024137006	35.0	23
TCAGATG	40	0.0024137006	35.0	4