SRR1780250_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780250_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75241
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	8404	11.169442192421684	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2196	2.9186214962586887	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	2136	2.838877739530309	No Hit
CACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTTCTG	2014	2.676732100849271	RNA PCR Primer, Index 32 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	532	0.707061309658298	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	244	0.3242912773620765	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	197	0.2618253345915126	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	120	0.15948751345675893	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	120	0.15948751345675893	No Hit
CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	109	0.1448678247232227	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	105	0.13955157427466408	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	87	0.11562844725615024	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	78	0.10366688374689331	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGAATG	15	0.0022168055	70.0	22
TCTTTAT	85	0.0	57.64706	1
CTTTATA	85	0.0	57.64706	2
TTTATAC	90	0.0	54.444443	3
CTATCTA	20	0.006926924	52.500004	4
CACTGCC	20	0.006926924	52.500004	3
CCCAAGA	20	0.006926924	52.500004	8
GACTAGC	20	0.006926924	52.500004	47
TTAATAC	30	5.8442284E-4	46.666664	3
TCTATAC	40	4.5537672E-5	43.750004	3
TATATAG	40	0.002405132	35.000004	5
ACAAGGA	40	0.002405132	35.000004	3
AAACTAA	60	1.2015236E-5	35.0	70
TAATACA	60	1.2015236E-5	35.0	4
CTTGAAA	1765	0.0	34.30595	57
TATGCCG	1810	0.0	34.226517	43
CTGCTTG	1790	0.0	34.217876	54
GTCTTCT	1795	0.0	34.122562	49
TGCTTGA	1785	0.0	34.11765	55
GCTTGAA	1775	0.0	34.112675	56