SRR1780249_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780249_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	278635
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCAGA	30	1.3032502E-4	36.644234	2
TCCGTTG	25	0.002350541	35.197414	22
GAAACTC	25	0.002352613	35.191093	26
CGAAACT	35	3.216324E-4	31.42062	25
AAGTCCC	30	0.005704399	29.368092	17
ACTTTAG	30	0.0057496647	29.320648	33
TCAGATG	30	0.0057547116	29.315386	4
CTCTAAT	30	0.0057547116	29.315386	1
ACTATAC	40	7.043617E-4	27.483173	1
GTCAGAT	40	7.043617E-4	27.483173	3
ATAAGAG	45	0.0013902794	24.460218	14
AAATAAG	45	0.0013975751	24.43826	31
TGTATAA	45	0.0013975751	24.43826	11
CGGCATT	50	0.0025792865	21.994434	25
CTTAATA	50	0.0025846707	21.98654	2
CACAACT	50	0.0025846707	21.98654	4
GCGTGTA	65	4.915544E-4	20.309847	34
CGATAGC	55	0.0044816583	19.994942	10
TAATACA	80	8.9991736E-5	19.238222	4
TATAAGA	60	0.0073783053	18.341867	13