Basic Statistics
Measure | Value |
---|---|
Filename | SRR1780246_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 72161 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT | 6573 | 9.108798381397154 | No Hit |
CACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTTCTG | 2183 | 3.025179806266543 | RNA PCR Primer, Index 47 (96% over 25bp) |
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC | 1857 | 2.5734122309834953 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG | 1666 | 2.308726320311526 | No Hit |
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC | 436 | 0.6042044871883705 | No Hit |
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT | 232 | 0.3215033051094081 | Illumina PCR Primer Index 9 (95% over 21bp) |
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT | 157 | 0.21756904699214258 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT | 110 | 0.15243691190532282 | No Hit |
TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC | 93 | 0.1288784800654093 | No Hit |
CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG | 93 | 0.1288784800654093 | No Hit |
CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG | 87 | 0.12056373941602805 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACAATG | 20 | 0.0069257906 | 52.5 | 55 |
GCTATGG | 20 | 0.0069257906 | 52.5 | 37 |
GCAGTAC | 20 | 0.0069257906 | 52.5 | 15 |
GCTTATA | 20 | 0.0069257906 | 52.5 | 3 |
CCTTTAC | 20 | 0.0069257906 | 52.5 | 1 |
ACTACAC | 20 | 0.0069257906 | 52.5 | 3 |
GTCAATT | 20 | 0.0069257906 | 52.5 | 12 |
CGCAGTA | 20 | 0.0069257906 | 52.5 | 14 |
CGGCTAT | 20 | 0.0069257906 | 52.5 | 35 |
TCTTTAT | 40 | 7.386134E-7 | 52.5 | 1 |
TTCATGT | 20 | 0.0069257906 | 52.5 | 57 |
CAATAGT | 20 | 0.0069257906 | 52.5 | 1 |
CTTTATA | 45 | 1.6637623E-6 | 46.666664 | 2 |
TACTACA | 35 | 0.001247964 | 40.0 | 2 |
CAGTACT | 35 | 0.001247964 | 40.0 | 16 |
TACTTGC | 40 | 0.002404487 | 35.0 | 7 |
TCTTCTG | 1445 | 0.0 | 33.66782 | 50 |
CCGTCTT | 1445 | 0.0 | 33.66782 | 47 |
CTGCTTG | 1455 | 0.0 | 33.436424 | 54 |
CGTCTTC | 1455 | 0.0 | 33.436424 | 48 |