SRR1780245_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780245_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414216
Sequences flagged as poor quality	0
Sequence length	50
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGT	17723	4.27868551673523	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	5276	1.273731579658922	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG	4619	1.115118682040288	No Hit
CACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCTTCTG	3825	0.9234312532591691	RNA PCR Primer, Index 14 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	953	0.23007319852444136	No Hit
ATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCTT	479	0.11564014910095215	RNA PCR Primer, Index 35 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCAC	20	7.8390853E-4	44.01316	4
TCTTCTG	515	0.0	37.16271	44
GTCTTCT	530	0.0	36.110928	43
CTTTATA	130	0.0	35.54909	2
AGATTCT	25	0.002351741	35.19778	20
TGCTCTA	25	0.002351741	35.19778	10
CGTCTTC	550	0.0	34.797802	42
CCGTCTT	555	0.0	34.48431	41
ATGCCGT	2605	0.0	32.850132	44
GCCGTCT	605	0.0	32.361595	40
AACTGAC	30	0.0057424814	29.331484	33
TATACCG	30	0.0057424814	29.331484	6
TCTATTA	30	0.0057424814	29.331484	40
TATGCCG	3040	0.0	28.14954	43
TTTATAC	180	0.0	26.896933	3
TGCCGTC	755	0.0	25.640766	39
TCTTTAT	190	0.0	25.515198	1
GCCAACA	45	0.0013971777	24.442902	25
CTAATAT	45	0.0013971777	24.442902	21
ACATCCA	65	1.8105447E-5	23.690813	36