SRR1780244_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780244_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	108926
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGACTTT	20	0.0069352346	52.5	33
CGCATCT	20	0.0069352346	52.5	24
TAGAACC	20	0.0069352346	52.5	65
TCGAGAT	20	0.0069352346	52.5	9
GCATACT	20	0.0069352346	52.5	66
TTTGATA	35	0.0012507705	40.0	37
CGGACTA	35	0.0012507705	40.0	24
AAGAGGT	45	9.1471404E-5	38.888885	16
ACATGTC	40	0.0024098614	35.0	20
ATTACTT	45	0.0042915205	31.111109	8
TTATGCT	45	0.0042915205	31.111109	19
CAGATAA	45	0.0042915205	31.111109	14
GCAGATA	45	0.0042915205	31.111109	13
CTAATAG	45	0.0042915205	31.111109	57
TAATAGC	60	4.955074E-4	29.166666	58
ACACTCT	60	4.955074E-4	29.166666	6
AATCCTC	50	0.0071821897	27.999998	23
CGGCGGA	50	0.0071821897	27.999998	21
GGCAGAT	50	0.0071821897	27.999998	12
AAAGTTA	50	0.0071821897	27.999998	52