SRR1780244_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780244_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	108926
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	4247	3.8989772873326847	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTTCTG	1600	1.4688871343848118	RNA PCR Primer, Index 18 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	1072	0.9841543800378239	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	830	0.7619852009621211	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	337	0.30938435267980097	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	192	0.1762664561261774	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	158	0.14505260452050014	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	135	0.12393735196371848	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	112	0.1028220994069368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGGAA	20	7.8964826E-5	70.0	67
CGGAATA	25	2.3814049E-4	55.999996	69
TCGGAAT	25	2.3814049E-4	55.999996	68
TTGCACT	25	2.3814049E-4	55.999996	27
GGCACCC	20	0.0069352346	52.5	12
GTAGACT	20	0.0069352346	52.5	8
GATTCTT	20	0.0069352346	52.5	1
CGGAACT	35	2.0749314E-5	50.0	34
AACTCGT	35	2.0749314E-5	50.0	37
TCTTTAT	65	1.8189894E-10	48.46154	1
CTTCGGA	30	5.85586E-4	46.666664	66
TACCAGG	30	5.85586E-4	46.666664	59
CTTTATA	70	3.783498E-10	45.0	2
GAGACAC	35	0.0012507705	40.0	9
GCTTCGG	35	0.0012507705	40.0	65
CTACCAG	35	0.0012507705	40.0	58
TGAAGTT	45	9.1471404E-5	38.888885	39
TTTCGGT	45	9.1471404E-5	38.888885	27
TTCGGTC	45	9.1471404E-5	38.888885	28
TTTTCGG	45	9.1471404E-5	38.888885	26