SRR1780236_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780236_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	206478
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGGTA	20	0.006944001	52.500004	60
GTAAGCG	20	0.006944001	52.500004	57
TCAACGT	20	0.006944001	52.500004	2
CCATTAG	20	0.006944001	52.500004	32
CACAAGG	30	5.8681413E-4	46.666664	15
GACGAAT	35	0.0012533779	40.0	23
CTTAGGT	40	0.002414854	35.000004	4
CCACAAG	55	2.985016E-4	31.81818	14
CTGACAT	55	2.985016E-4	31.81818	21
CGTATCC	45	0.0043003573	31.111113	56
GTCTACT	45	0.0043003573	31.111113	1
TCTCGTT	50	0.0071968893	27.999998	40
GGAAAGA	50	0.0071968893	27.999998	51
GCCGTAT	50	0.0071968893	27.999998	54
CTGTGTT	50	0.0071968893	27.999998	9
GAAAAGA	65	7.937119E-4	26.923077	34
GAAAAAG	80	8.636905E-5	26.250002	13
CTTGGTG	85	1.3039443E-4	24.705883	16
CGGGACC	85	1.3039443E-4	24.705883	4
GATCTCT	85	1.3039443E-4	24.705883	41