SRR1780232_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780232_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177795
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	7742	4.354453162349897	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	2330	1.310498045501842	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2090	1.1755111223600214	No Hit
CACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTTCTG	1975	1.1108298883545655	TruSeq Adapter, Index 2 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	508	0.285722320650187	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	263	0.14792316994291177	TruSeq Adapter, Index 2 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	204	0.11473888467054753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	65	0.0	59.230766	2
TTTATAC	90	0.0	58.33333	3
ACAAAAG	20	0.0069424207	52.5	57
CTGTAGA	20	0.0069424207	52.5	1
CTATAAC	20	0.0069424207	52.5	2
CTTGCAT	20	0.0069424207	52.5	13
TGTATAA	30	5.865926E-4	46.666664	11
GGTTTTC	35	0.0012529077	40.0	37
CATTACC	35	0.0012529077	40.0	29
CCAGTAG	35	0.0012529077	40.0	3
CATACAG	45	9.170543E-5	38.888885	5
CCCGACA	45	9.170543E-5	38.888885	21
CTTGAAA	1630	0.0	35.858894	57
TTGAAAA	1635	0.0	35.749233	58
TATGCCG	1675	0.0	35.731346	43
CGTATGC	1685	0.0	35.519287	41
CTCGTAT	1685	0.0	35.519287	39
TCGTATG	1685	0.0	35.519287	40
TGAAAAA	1655	0.0	35.31722	59
GTATGCC	1700	0.0	35.205883	42