SRR1780230_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780230_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	115386
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATAC	20	0.006936271	52.5	3
CTATAAT	20	0.006936271	52.5	39
GCTACAG	20	0.006936271	52.5	3
TACAGGT	20	0.006936271	52.5	7
TAAGTAG	30	5.8573135E-4	46.666664	33
TAAGGTT	30	5.8573135E-4	46.666664	5
AACGTGG	35	0.0012510786	40.000004	62
AGTGATA	35	0.0012510786	40.000004	43
ACGTGGT	35	0.0012510786	40.000004	63
GTGATAT	40	0.0024104516	35.0	44
AGAACGT	40	0.0024104516	35.0	60
TTGAGTC	40	0.0024104516	35.0	23
TGGTTAC	40	0.0024104516	35.0	66
AGGTTGT	40	0.0024104516	35.0	7
CAATGCC	40	0.0024104516	35.0	24
ACTCCGG	40	0.0024104516	35.0	11
TAGTGAT	40	0.0024104516	35.0	4
ATACAAT	40	0.0024104516	35.0	21
AGAGACA	50	1.7009799E-4	35.0	6
TCAGGCC	55	2.976907E-4	31.81818	33