SRR1780230_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780230_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	115386
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	5402	4.681677153207494	No Hit
CACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTTCTG	1666	1.443849340474581	RNA PCR Primer, Index 23 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1493	1.2939178063196575	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1341	1.1621860537673547	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	376	0.3258627563135909	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	243	0.210597472830326	RNA PCR Primer, Index 47 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	140	0.12133187735080511	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	122	0.10573206454855875	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	15	0.00221982	70.0	39
TGCGGGT	20	0.006936271	52.5	45
CTCGGGC	20	0.006936271	52.5	2
TAGCTTG	20	0.006936271	52.5	23
CGATATG	20	0.006936271	52.5	24
CTTTATA	50	6.136543E-8	48.999996	2
TTAATAC	45	1.6725389E-6	46.666664	3
TCTTTAT	55	1.298904E-7	44.545452	1
TTTATAC	80	2.910383E-11	43.75	3
CTTAATA	50	3.4536351E-6	42.0	2
CGCTCTA	35	0.0012510786	40.000004	14
AAAGACC	35	0.0012510786	40.000004	69
TAATACA	75	3.4950062E-8	37.333336	4
TATGCCG	1420	0.0	35.24648	43
TCTGACT	40	0.0024104516	35.0	59
AACGGCC	40	0.0024104516	35.0	24
ACTACAC	50	1.7009799E-4	35.0	3
ATGCCGT	1420	0.0	35.0	44
GCCGTCT	1420	0.0	35.0	46
TCGTATG	1425	0.0	34.87719	40