SRR1780228_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780228_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128420
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTGCAA	25	2.3830187E-4	56.000004	13
ACACGTG	20	0.0069380524	52.5	8
CGCTGGT	20	0.0069380524	52.5	27
CGCTGCA	20	0.0069380524	52.5	16
ATGTACC	20	0.0069380524	52.5	54
TGCAAAG	35	2.0770318E-5	50.000004	15
GGCTATA	40	4.5719295E-5	43.75	30
AGAGTAG	35	0.0012516078	40.000004	27
AGTGTGC	35	0.0012516078	40.000004	7
TAGAGTA	40	0.0024114659	35.0	26
ACGGGTT	40	0.0024114659	35.0	37
ATGACGG	40	0.0024114659	35.0	34
TGCAGAC	40	0.0024114659	35.0	19
GTTGGGC	40	0.0024114659	35.0	41
CGGGTTG	45	0.004294359	31.111109	38
GCAAAGA	45	0.004294359	31.111109	16
TAATTGG	45	0.004294359	31.111109	34
GTAGAGT	45	0.004294359	31.111109	25
TACTGCG	45	0.004294359	31.111109	32
TAGATGA	45	0.004294359	31.111109	31