SRR1780228_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780228_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128420
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	7664	5.967917769817785	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	2332	1.8159165239059336	No Hit
CACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTTCTG	2013	1.567512848465971	Illumina PCR Primer Index 9 (96% over 25bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	1965	1.5301354929138764	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	485	0.3776670300576234	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	235	0.18299330322379692	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	193	0.15028811711571408	Illumina PCR Primer Index 9 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	140	0.10901728702694286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTTGAT	20	0.0069380524	52.5	37
GCTTATA	20	0.0069380524	52.5	3
GTCAATT	20	0.0069380524	52.5	12
AAGCTGG	20	0.0069380524	52.5	70
CTTTATA	35	2.0770318E-5	50.000004	2
CAGCAAA	30	5.8598054E-4	46.666664	20
TATACCG	30	5.8598054E-4	46.666664	6
TAAGCGC	30	5.8598054E-4	46.666664	47
TTCAGCA	35	0.0012516078	40.000004	18
GTAAGCG	35	0.0012516078	40.000004	46
CCCAGGG	50	1.7020512E-4	35.000004	2
TCTTTAT	50	1.7020512E-4	35.000004	1
TCTTCAG	40	0.0024114659	35.0	16
CCATCGT	40	0.0024114659	35.0	31
TCAGCAA	40	0.0024114659	35.0	19
TATGCCG	1725	0.0	34.492752	43
CGTATGC	1725	0.0	34.289852	41
GTATGCC	1725	0.0	34.289852	42
TCGTATG	1725	0.0	34.289852	40
CTCGTAT	1715	0.0	34.285713	39