SRR1780226_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780226_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138018
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	8371	6.065150922343462	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	2285	1.655581156081091	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2237	1.620803083655755	No Hit
CACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTTCTG	2018	1.4621281282151604	RNA PCR Primer, Index 32 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	546	0.395600573838195	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	328	0.23765016157312815	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	273	0.1978002869190975	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	179	0.12969322841948153	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	166	0.12027416713761972	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGAGA	15	0.0022207468	70.0	3
TCTTTAT	85	0.0	61.764706	1
CTTTATA	95	0.0	55.26316	2
CTAAAAT	20	0.006939146	52.5	63
ATAAGTT	20	0.006939146	52.5	29
GCCTAAA	20	0.006939146	52.5	1
CATAAGT	20	0.006939146	52.5	28
CACCGGT	20	0.006939146	52.5	7
CGCAAAG	20	0.006939146	52.5	12
ACATAAG	20	0.006939146	52.5	27
TGAGAGC	20	0.006939146	52.5	49
TTTATAC	115	0.0	51.73913	3
ATCGTAT	50	6.148366E-8	48.999996	39
GCTTATA	30	5.8613386E-4	46.666664	3
ATATCGT	55	1.301396E-7	44.545456	37
TATCGTA	55	1.301396E-7	44.545456	38
ACTCGTA	40	4.5737175E-5	43.75	38
TCGATAT	50	3.4585955E-6	42.0	34
CTCGATA	50	3.4585955E-6	42.0	33
TTAATAC	35	0.0012519333	40.000004	2