SRR1780224_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780224_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	124721
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	3954	3.170276056157343	No Hit
CACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTTCTG	2091	1.676542041837381	Illumina PCR Primer Index 8 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	1042	0.8354647573383793	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	1008	0.8082039111296414	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	325	0.26058161817175934	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	208	0.166772235629926	RNA PCR Primer, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATTAC	20	7.9009755E-5	70.0	43
TTTCGCC	20	0.0069375853	52.5	33
TTATGCA	20	0.0069375853	52.5	50
ACGATGC	20	0.0069375853	52.5	8
ATGGTCA	20	0.0069375853	52.5	14
CCGAAGA	20	0.0069375853	52.5	29
GGCGCAT	20	0.0069375853	52.5	10
TAAGCCA	20	0.0069375853	52.5	43
TGGTCAT	20	0.0069375853	52.5	15
TACTTAT	30	5.8591506E-4	46.666668	47
TATGACA	30	5.8591506E-4	46.666668	53
ACTAAGC	40	4.5711666E-5	43.75	41
CTAGAAC	35	0.0012514691	40.0	64
ACACAGT	35	0.0012514691	40.0	34
TTACTTA	35	0.0012514691	40.0	46
TACATAC	35	0.0012514691	40.0	43
GGATATT	45	9.154789E-5	38.88889	1
TCCATAC	40	0.0024111997	35.0	64
TTTACAC	40	0.0024111997	35.0	3
CTTATAT	40	0.0024111997	35.0	49