SRR1780220_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780220_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	145658
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	6121	4.202309519559516	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTTCTG	2067	1.4190775652555987	RNA PCR Primer, Index 18 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	1869	1.2831427041425805	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	1679	1.1527001606502905	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	450	0.30894286616595035	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	258	0.17712724326847823	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	256	0.1757541638632962	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	166	0.11396559063010614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTCA	20	0.0069399164	52.499996	55
CTTACAG	20	0.0069399164	52.499996	69
TCTTTAT	100	0.0	49.000004	1
CTTTATA	100	0.0	49.000004	2
GCTTTAC	45	1.6755966E-6	46.666664	1
TATTAAC	40	4.574975E-5	43.749996	2
ACGTTCT	35	0.0012521622	40.0	39
ATCACTC	35	0.0012521622	40.0	57
CCACGTT	35	0.0012521622	40.0	37
GTATAAG	45	9.162379E-5	38.888885	1
TTTATAC	165	0.0	36.060608	3
AGAACTC	50	1.7031736E-4	35.000004	17
ATAAGAG	50	1.7031736E-4	35.000004	3
TATAAGA	50	1.7031736E-4	35.000004	2
TATCACT	40	0.0024125273	34.999996	56
AAGAGAC	55	2.980728E-4	31.81818	5
TGATCAA	45	0.004296238	31.111109	48
CTACTGG	45	0.004296238	31.111109	9
TTGTATT	45	0.004296238	31.111109	37
GTGCTAG	45	0.004296238	31.111109	27