SRR1780218_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780218_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	129146
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	7890	6.109364595109411	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2456	1.901723630619609	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	2126	1.6461988756910784	No Hit
CACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCTG	1981	1.5339228470103603	Illumina PCR Primer Index 10 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	513	0.3972248462979883	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	227	0.1757700586932619	Illumina PCR Primer Index 10 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	155	0.1200192030724916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	65	0.0	64.61539	2
TCTTTGC	25	2.3830678E-4	56.000004	30
TCGTTCT	20	0.006938137	52.5	55
GTTGTAC	20	0.006938137	52.5	14
CTCGAAT	20	0.006938137	52.5	43
CACGTAG	20	0.006938137	52.5	68
ATACCTT	20	0.006938137	52.5	66
TCTTTAT	95	0.0	44.210526	1
TACCTCG	40	4.5720684E-5	43.75	36
ATCACGT	35	0.0012516335	40.0	66
TACCGCA	35	0.0012516335	40.0	7
TTTATAC	120	0.0	37.916664	3
CTCGTAT	1640	0.0	31.585365	39
TCGTATG	1640	0.0	31.585365	40
TCTTCTG	1645	0.0	31.489363	50
CGTATGC	1635	0.0	31.46789	41
GTCTTCT	1660	0.0	31.415665	49
TATGCCG	1640	0.0	31.371952	43
GCCGTCT	1640	0.0	31.371952	46
CCGTCTT	1645	0.0	31.276596	47