SRR1780216_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780216_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	316430
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	13779	4.354517586828051	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	3972	1.2552539266188414	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	3542	1.119362892266852	No Hit
CACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTTCTG	3300	1.0428846822361977	RNA PCR Primer, Index 34 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	886	0.27999873589735486	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	456	0.14410770154536548	RNA PCR Primer, Index 24 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	352	0.11124103277186108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGTAC	20	0.0069474056	52.5	60
TTAATAC	50	6.182381E-8	49.000004	3
TCTTTAT	170	0.0	47.35294	1
CTTTATA	175	0.0	46.0	2
TTTATAC	260	0.0	41.73077	3
TATACCG	35	0.0012543902	40.0	6
ACGAGTG	35	0.0012543902	40.0	5
GTGTTTC	40	0.0024167935	35.0	16
GATAAAG	40	0.0024167935	35.0	16
TGTATAA	40	0.0024167935	35.0	14
AGTGCGG	40	0.0024167935	35.0	8
CCGTCTT	3140	0.0	32.54777	47
CTCGTAT	3170	0.0	32.460567	39
TCGTATG	3205	0.0	32.433693	40
TATGCCG	3195	0.0	32.425663	43
CGTCTTC	3175	0.0	32.299213	48
CGTATGC	3210	0.0	32.274143	41
GCCGTCT	3205	0.0	32.106083	46
CTGCTTG	3220	0.0	32.06522	54
TCTCGTA	3100	0.0	32.064518	38