SRR1780213_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780213_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470492
Sequences flagged as poor quality	0
Sequence length	50
%GC	63

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT	21580	4.5866879776914375	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	6460	1.3730307847954906	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG	5588	1.1876928831946134	No Hit
CACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTTCTG	4054	0.8616512076719689	Illumina PCR Primer Index 2 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	1262	0.2682298530049395	No Hit
ATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTT	498	0.10584664563903319	Illumina PCR Primer Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	155	0.0	38.389626	1
GTCTTCT	575	0.0	37.49339	43
TCTTCTG	585	0.0	36.852474	44
TGAATCG	25	0.0023520335	35.197876	15
CTTTATA	175	0.0	33.948025	2
CGTCTTC	655	0.0	32.914043	42
ATGCCGT	3040	0.0	32.057278	44
TTTATAC	210	0.0	31.433355	3
CCGTCTT	700	0.0	30.798141	41
TTGGCTG	30	0.005743187	29.331564	19
CTATCTT	30	0.005743187	29.331564	25
GCATTAC	30	0.005743187	29.331564	43
ATACCCT	30	0.005743187	29.331564	10
CCTCTAT	30	0.005743187	29.331564	22
GCTTATA	40	7.019456E-4	27.504185	3
TTAGGAA	40	7.0281856E-4	27.498339	38
ACCTAGC	40	7.0281856E-4	27.498339	7
TATCTTA	40	7.0281856E-4	27.498339	26
GCCGTCT	815	0.0	26.722313	40
TATGCCG	3715	0.0	26.291819	43