SRR1780209_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780209_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	496721
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCGT	22097	4.448573746630402	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCC	5883	1.1843670793060894	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCG	5747	1.1569875241835959	No Hit
CACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCGTCTTCTG	4294	0.8644691889410756	RNA PCR Primer, Index 13 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCC	1399	0.28164704129682455	No Hit
ATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCGTCTT	597	0.12018819417741548	TruSeq Adapter, Index 8 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	205	0.0	36.575512	1
TCTTCTG	515	0.0	33.746956	44
CTTTATA	220	0.0	33.00272	2
ATGCCGT	3075	0.0	32.552254	44
GTCTTCT	560	0.0	31.035145	43
CGTCTTC	590	0.0	30.202835	42
GATCCTA	30	0.005674812	29.403841	1
ATTCGCA	30	0.005742311	29.332798	39
CAGTATT	30	0.005742311	29.332798	14
AATATCG	75	2.1609594E-9	29.332794	36
TTATCAA	30	0.005745137	29.329842	32
TTCTAGC	40	7.0228754E-4	27.502266	2
TATTACA	40	7.0228754E-4	27.502266	4
ATCGTAT	80	4.303729E-9	27.499498	39
ATATCGT	80	4.303729E-9	27.499498	37
TATGCCG	3750	0.0	26.692844	43
TCTAGCA	50	8.32705E-5	26.402176	3
TTTATAC	280	0.0	25.930706	3
TATCGTA	85	8.212737E-9	25.88188	38
CCGTCTT	710	0.0	24.478426	41