SRR1780205_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780205_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	476937
Sequences flagged as poor quality	0
Sequence length	50
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCCGT	15281	3.20398710940858	No Hit
CACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCCGTCTTCTG	4231	0.8871192631311892	Illumina PCR Primer Index 2 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCC	4009	0.8405722349073358	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCCG	4009	0.8405722349073358	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCC	1019	0.2136550529734535	No Hit
ATACACATCTCCGAGCCCACGAGACTTCCATATATCTCGTATGCCGTCTT	523	0.10965808901385297	Illumina PCR Primer Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTCTG	485	0.0	37.64778	44
CGTCTTC	490	0.0	36.3657	42
CCGTCTT	495	0.0	35.99837	41
GTCTTCT	500	0.0	35.638386	43
TATTGGA	25	0.0023518912	35.198406	26
TCTTTAT	170	0.0	33.68792	1
CTTTATA	180	0.0	31.776339	2
GCGCTAT	35	3.21384E-4	31.430445	19
TATCGAT	35	3.215817E-4	31.42715	42
ATGCCGT	2330	0.0	29.929976	44
AAATCGT	45	4.065696E-5	29.332005	32
CTATAAC	60	2.9402145E-7	29.332005	4
TCTCGTT	30	0.0057428414	29.332005	34
AATCGTA	45	4.065696E-5	29.332005	33
GCTATAC	40	7.027707E-4	27.498755	3
TCGATTA	40	7.027707E-4	27.498755	44
GTTCGCA	40	7.027707E-4	27.498755	35
AAAATCG	50	8.3336E-5	26.398806	31
GCCGTCT	675	0.0	26.398804	40
TATGCCG	2685	0.0	25.972755	43