SRR1780204_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780204_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70563
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	3459	4.902002465881552	No Hit
CACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTTCTG	1486	2.1059195328996783	Illumina PCR Primer Index 9 (96% over 25bp)
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	932	1.3208055213072005	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	885	1.2541983759193913	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	299	0.4237348185309581	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	189	0.2678457548573615	Illumina PCR Primer Index 9 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	135	0.1913183963266868	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	121	0.1714779700409563	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	76	0.10770517126539406	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT	74	0.10487082465314684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACT	20	0.0069251554	52.500004	17
AGGAGTG	20	0.0069251554	52.500004	5
GTCTAGG	20	0.0069251554	52.500004	2
TTGACTT	20	0.0069251554	52.500004	43
GGGGCCG	20	0.0069251554	52.500004	36
TCTTTAT	35	0.0012477753	40.000004	1
CTTTATA	35	0.0012477753	40.000004	2
GATTAAG	35	0.0012477753	40.000004	28
AACAAAT	45	9.114372E-5	38.88889	70
AGTGGGT	40	0.0024041256	35.000004	69
TTTATAC	65	2.0763338E-5	32.307693	3
TCCAATT	45	0.0042813676	31.111113	21
GTCTTCT	920	0.0	28.152172	49
TTCTGCT	910	0.0	28.076923	52
CCGTCTT	935	0.0	28.074867	47
TCCATCC	50	0.0071653016	28.000002	8
GGTGTGA	50	0.0071653016	28.000002	29
GTGAGGA	50	0.0071653016	28.000002	32
TCTTCTG	930	0.0	27.849463	50
CGTCTTC	930	0.0	27.849463	48