FastQCFastQC Report
Wed 25 May 2016
SRR1780202_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780202_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37858
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGAT150.002208273270.012
TATAATC150.002208273270.04
GACCAAG200.00690046952.569
GGCGCGA200.00690046952.511
TCTGACG4150.0080985417.590361669
CTGACGC4150.0080985417.590361670
ACATCTG5200.0078048286.73076966
ATACACA6250.00654832656.160000362
Produced by FastQC (version 0.11.5)