SRR1780201_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780201_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	267368
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGT	13797	5.160303402052602	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCG	3749	1.4021872475389725	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCC	3426	1.2813799706771192	No Hit
CACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTCTTCTG	2967	1.109706471978696	Illumina PCR Primer Index 4 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCC	1025	0.38336674545944166	No Hit
ATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTCTT	456	0.17055144968732233	RNA PCR Primer, Index 27 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCG	273	0.10210646001017326	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTATA	25	4.4240867E-5	44.01609	1
TCGTTTA	20	7.845962E-4	43.999622	32
TTGCTAA	20	7.845962E-4	43.999622	39
TCTTCTG	330	0.0	39.333	44
GTCTTCT	350	0.0	37.0854	43
CCTCAAA	25	0.0023496249	35.1997	14
GTATAGC	25	0.0023496249	35.1997	13
CGTTTAT	25	0.0023496249	35.1997	33
TCTTTAT	145	0.0	34.90931	1
CTTTATA	155	0.0	32.644882	2
ATGCCGT	2035	0.0	32.540264	44
CGTCTTC	405	0.0	32.049107	42
TTTATAC	175	0.0	31.428305	3
CCGTCTT	445	0.0	29.66267	41
TTTCGTT	30	0.0057373554	29.333082	30
GCTTAGT	30	0.0057373554	29.333082	18
TTCGGTC	30	0.0057373554	29.333082	28
TTCTGAT	30	0.0057373554	29.333082	19
ATCCCTA	40	7.018068E-4	27.499765	39
GCCGTCT	490	0.0	26.489573	40