SRR1780196_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780196_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43083
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	2621	6.083606062716153	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTTCTG	1512	3.509504909128891	RNA PCR Primer, Index 18 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	636	1.4762203189192953	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	417	0.9678991713668964	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	273	0.6336606085927163	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	193	0.44797251816261635	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	128	0.29710094468816006	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	120	0.27853213564515006	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	77	0.1787247870389713	No Hit
CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	65	0.1508715734744563	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	63	0.14622937121370377	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT	60	0.13926606782257503	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGTCTTCTG	46	0.10677065199730754	RNA PCR Primer, Index 30 (95% over 24bp)
CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC	45	0.10444955086693128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACA	15	0.0022103465	70.0	1
TCTTTAT	35	2.9087278E-7	60.000004	1
TTATCCC	20	0.0069068973	52.5	53
AAGTTAA	20	0.0069068973	52.5	19
GCTTATA	20	0.0069068973	52.5	3
TCAGAGC	20	0.0069068973	52.5	8
GTCAACC	20	0.0069068973	52.5	20
GCTCGTA	20	0.0069068973	52.5	38
CGATCGG	20	0.0069068973	52.5	26
CTTTATA	45	1.6480135E-6	46.666664	2
TTTATAC	50	3.4032018E-6	42.000004	3
CGGAACT	55	6.550319E-6	38.181816	34
GCCGGAA	70	8.444258E-7	35.000004	32
CCGGAAC	60	1.1896227E-5	35.0	33
AACTCGT	60	1.1896227E-5	35.0	37
ACTCGTA	65	2.0576521E-5	32.307693	38
GGAACTC	80	2.3965877E-6	30.625	35
CTCGTAT	755	0.0	28.278145	39
CTTGAAA	725	0.0	27.517242	57
CGTATGC	790	0.0	27.468355	41