SRR1780195_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780195_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	385832
Sequences flagged as poor quality	0
Sequence length	50
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGT	14548	3.770552986792179	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCC	4022	1.0424226088038318	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCG	3889	1.0079516473491055	No Hit
CACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTCTTCTG	3353	0.8690310808849447	TruSeq Adapter, Index 5 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCC	969	0.2511455763130067	No Hit
ATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTCTT	439	0.11378009081672853	TruSeq Adapter, Index 5 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	100	0.0	37.402977	2
TACTGAC	30	1.2998757E-4	36.66483	34
TCTTCTG	400	0.0	35.74821	44
GTCTTCT	415	0.0	35.516296	43
ATGCCGT	2200	0.0	31.698414	44
TTCTGAT	35	3.2147768E-4	31.427	19
CGTCTTC	470	0.0	30.89207	42
TCTTTAT	130	0.0	30.51538	1
TTAATAC	30	0.005737996	29.335667	2
GCTTATA	30	0.005737996	29.335667	3
TGTGTAC	30	0.005737996	29.335667	2
AACCGGT	30	0.0057416325	29.331865	7
TTAAAGC	30	0.0057416325	29.331865	28
ATCGGTT	30	0.0057416325	29.331865	22
TAAATGT	30	0.0057416325	29.331865	25
AAATGTC	30	0.0057416325	29.331865	26
TTTATAC	145	0.0	28.829876	3
CCGTCTT	505	0.0	28.315414	41
ACAATTC	40	7.0254545E-4	27.498623	21
CACAATT	40	7.0254545E-4	27.498623	20