SRR1780194_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780194_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111241
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	3096	2.7831465017394663	No Hit
CACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCTG	1509	1.3565142348594492	Illumina PCR Primer Index 10 (96% over 26bp)
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	874	0.7856815382817486	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	720	0.6472433724975504	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	257	0.2310299260164867	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	175	0.1573160974820435	Illumina PCR Primer Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	45	2.6739144E-8	54.444443	2
CTGAATT	20	0.0069356184	52.5	24
GTTATAT	20	0.0069356184	52.5	40
CCACATA	20	0.0069356184	52.5	69
GCATACT	20	0.0069356184	52.5	52
TTTATAC	80	1.4006218E-9	39.375	3
CACATAG	40	0.00241008	35.0	70
TATTCTG	55	2.9762226E-4	31.81818	20
TATGCCG	770	0.0	31.36364	43
CGTATGC	775	0.0	31.161291	41
TTAGAGG	45	0.0042919074	31.111109	4
TTGCCGC	45	0.0042919074	31.111109	38
TCGTATG	785	0.0	30.76433	40
CTCGTAT	770	0.0	30.454548	39
GTATGCC	795	0.0	30.377357	42
TCTCGTA	740	0.0	30.270271	38
ATGCCGT	800	0.0	30.187498	44
TATCTCG	745	0.0	30.067114	36
CCGTCTT	760	0.0	29.934212	47
ATCTCGT	750	0.0	29.866667	37