SRR1780192_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780192_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68412
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	5155	7.535227737823774	No Hit
CACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTTCTG	1513	2.2116003040402266	RNA PCR Primer, Index 34 (96% over 25bp)
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	1296	1.8944044904402737	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1111	1.6239840963573644	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	383	0.5598433023446179	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	253	0.36981816055662753	RNA PCR Primer, Index 24 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	174	0.25434134362392563	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	132	0.19294860550780565	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	122	0.17833128690872946	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	113	0.1651757001695609	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	100	0.14617318599076187	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	72	0.10524469391334855	No Hit
CAGCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGC	69	0.10085949833362569	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTCTT	15	0.0022159447	70.00001	27
CTTTATA	65	0.0	64.61539	2
TCTTTAT	60	0.0	64.16667	1
TTAATAC	20	0.006924257	52.5	3
ATTCGAG	20	0.006924257	52.5	48
AAGCGAG	20	0.006924257	52.5	15
AGTGCTA	20	0.006924257	52.5	53
GAATTAT	20	0.006924257	52.5	43
AGTAAGG	20	0.006924257	52.5	2
TGCGTCG	20	0.006924257	52.5	45
GAGAAGA	30	5.8404944E-4	46.666668	38
TTTATAC	90	0.0	46.666664	3
TAGCACC	55	1.2885175E-7	44.545452	33
AGCACCT	60	2.5522786E-7	40.833336	34
ACAACAA	35	0.0012475083	40.0	70
GTGTGGG	35	0.0012475083	40.0	47
GTATAGG	35	0.0012475083	40.0	1
TGCTATA	35	0.0012475083	40.0	55
GCACCTC	65	4.781359E-7	37.69231	35
CTCGTAT	1270	0.0	35.0	39