SRR1780191_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780191_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	309778
Sequences flagged as poor quality	0
Sequence length	50
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGT	16853	5.44034760376786	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCG	4459	1.4394179057260361	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCC	4202	1.356455267966092	No Hit
CACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTCTTCTG	3549	1.1456591494554165	TruSeq Adapter, Index 2 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCC	1119	0.36122642666683885	No Hit
ATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTCTT	570	0.18400273744423426	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTACT	20	7.8424625E-4	44.005814	4
ACAGAAG	20	7.8424625E-4	44.005814	3
CTCTAGC	20	7.8424625E-4	44.005814	2
TCTTCTG	540	0.0	37.48038	44
TGGGATT	30	1.2991257E-4	36.66559	22
CTTGTAC	25	0.002348578	35.20465	3
CCCTATG	25	0.0023504393	35.198967	13
TGCATAA	25	0.0023504393	35.198967	14
CTGCATA	25	0.0023504393	35.198967	13
ACTTTGC	25	0.0023504393	35.198967	38
TGTACTA	25	0.0023504393	35.198967	5
TCTTTAT	140	0.0	34.59834	1
GTCTTCT	585	0.0	34.597275	43
CGTCTTC	590	0.0	34.304077	42
GCTTATA	45	1.0328422E-6	34.22674	3
CTTAATA	80	3.6379788E-12	33.00436	2
TTAATAC	80	3.6379788E-12	33.00436	3
CCGTCTT	630	0.0	32.12604	41
TGGACTG	35	3.2129342E-4	31.42765	5
TCCCTAT	35	3.2129342E-4	31.42765	12