SRR1780189_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780189_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	119047
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTTCTG	3562	2.9920955588969065	Illumina PCR Primer Index 2 (95% over 24bp)
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT	458	0.38472200055440287	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	327	0.27468142834342735	No Hit
ATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTT	284	0.2385612405184507	Illumina PCR Primer Index 2 (95% over 21bp)
ACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTTCTGC	130	0.10920056784295279	Illumina PCR Primer Index 2 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTATC	30	2.510542E-6	43.99496	30
TCTTCTG	415	0.0	40.814598	44
TCTTTAT	45	2.2888344E-8	39.172466	1
GTCTTCT	440	0.0	38.49559	43
CGTCTTC	460	0.0	36.34366	42
TTATCAA	25	0.0023456248	35.195965	32
CCGTCTT	505	0.0	33.105118	41
GCCGTCT	510	0.0	32.780556	40
TTATATA	35	3.1869777E-4	31.451399	2
CGGGATA	35	3.1869777E-4	31.451399	4
GATAATC	35	3.2027447E-4	31.424969	7
TTTGCAA	35	3.2027447E-4	31.424969	40
CTTTATA	50	2.3246957E-6	30.82237	2
CTTAGGG	50	2.3246957E-6	30.82237	3
CTATACA	30	0.0056807683	29.379347	1
TGCTAAT	30	0.0056807683	29.379347	1
ACATGTC	30	0.0057276976	29.329973	10
TTCGGCT	30	0.0057276976	29.329973	23
TTTTGAC	30	0.0057276976	29.329973	31
TCGACGC	30	0.0057276976	29.329973	43