SRR1780187_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780187_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526451
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT	17608	3.344660756651616	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG	4761	0.9043576705144449	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	4357	0.8276173850937695	No Hit
CACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTCTTCTG	4185	0.7949457784295214	TruSeq Adapter, Index 9 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	1109	0.21065588250378475	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATATCGTATGCCGT	947	0.17988378785490006	No Hit
ATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTCTT	568	0.10789228247263277	TruSeq Adapter, Index 9 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTCTG	430	0.0	37.349644	44
GTATACG	30	1.2999718E-4	36.667458	44
GTCTTCT	465	0.0	34.53838	43
CTTTATA	185	0.0	33.301178	2
ATGCCGT	2750	0.0	32.080692	44
CGTCTTC	515	0.0	31.18514	42
GTTCTAA	30	0.005741499	29.333967	39
CCGTCTT	565	0.0	28.425392	41
TCTTTAT	210	0.0	28.332075	1
ATGTATA	40	7.025936E-4	27.500595	42
TATGCCG	3250	0.0	27.1452	43
TTTATAC	260	0.0	27.08008	3
ATCGTAT	230	0.0	26.783188	39
ATATCGT	230	0.0	26.783188	37
CTGATAT	240	0.0	25.664783	34
TATCGTA	275	0.0	25.600552	38
TAGACAC	45	0.0013977638	24.442652	10
ACACACG	45	0.0013977638	24.442652	13
AGCATAT	45	0.0013977638	24.442652	20
AGTAACG	45	0.0013977638	24.442652	12