SRR1780184_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780184_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	116995
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	3659	3.1274840805162616	No Hit
CACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTTCTG	1184	1.0120090602162484	TruSeq Adapter, Index 2 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1093	0.9342279584597633	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	938	0.8017436642591564	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	288	0.24616436599854694	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	163	0.13932219325612205	TruSeq Adapter, Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTC	15	0.0022198975	70.0	38
ACAAGCG	20	7.898922E-5	70.0	53
TCTTTAT	40	1.05610525E-8	61.25	1
CTTTATA	40	1.05610525E-8	61.25	2
TCGCTAC	25	2.3821366E-4	55.999996	39
CGTAACT	25	2.3821366E-4	55.999996	34
ACGTAAC	25	2.3821366E-4	55.999996	33
TAACTCG	25	2.3821366E-4	55.999996	36
GTGCATC	20	0.006936511	52.5	1
TGCATAA	20	0.006936511	52.5	30
CTGCATA	20	0.006936511	52.5	29
GCCCAAG	30	5.8576494E-4	46.666664	1
TTAATAC	30	5.8576494E-4	46.666664	3
TATAAGA	40	4.5694123E-5	43.75	2
CGCCTAT	35	0.0012511499	40.000004	58
TGACAAG	35	0.0012511499	40.000004	51
AACTCGT	35	0.0012511499	40.000004	37
ACATCGT	35	0.0012511499	40.000004	23
CACGTAA	35	0.0012511499	40.000004	32
CCTATAG	35	0.0012511499	40.000004	60