SRR1780182_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780182_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117107
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	6795	5.802385852254775	No Hit
CACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTTCTG	1917	1.6369644854705525	RNA PCR Primer, Index 23 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1850	1.5797518508714252	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1847	1.5771900911132553	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	493	0.42098252025925015	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	271	0.23141229815467906	RNA PCR Primer, Index 47 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	207	0.17676142331372163	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	138	0.11784094887581442	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	129	0.11015566960130478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAAAAG	15	0.0022199037	70.00001	3
TGTCTTC	15	0.0022199037	70.00001	48
TCTTTAT	80	0.0	65.625	1
CTTTATA	90	0.0	58.33333	2
TTTATAC	125	0.0	53.199997	3
TTGGACT	20	0.006936534	52.5	70
ATAGGAC	20	0.006936534	52.5	21
GGGTATC	20	0.006936534	52.5	9
TCTTAAA	20	0.006936534	52.5	57
GGCATAA	20	0.006936534	52.5	1
CCAGTTT	20	0.006936534	52.5	21
CCGCAGT	20	0.006936534	52.5	48
TGGCGTA	35	0.0012511568	40.0	24
GGGTACA	35	0.0012511568	40.0	62
AGGAGTG	40	0.0024106011	35.0	5
GAATATG	40	0.0024106011	35.0	1
CCTTTAA	40	0.0024106011	35.0	1
TTGCCGC	40	0.0024106011	35.0	45
TAGTGAA	40	0.0024106011	35.0	9
AAATGGA	40	0.0024106011	35.0	14