SRR1780180_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780180_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	193213
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	6759	3.498211818045369	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1881	0.9735369773255422	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	1662	0.8601905668873212	No Hit
CACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTTCTG	1646	0.8519095505995974	Illumina PCR Primer Index 9 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	410	0.21220104237292522	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	241	0.12473280783384141	Illumina PCR Primer Index 9 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	239	0.12369768079787594	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTG	15	0.0022220965	70.0	57
CAGCTTA	15	0.0022220965	70.0	11
TCTTTAT	55	3.6379788E-11	57.272724	1
CTAAGTC	20	0.00694333	52.5	26
ATTGGGG	20	0.00694333	52.5	60
CTTTATA	60	8.367351E-11	52.5	2
TTTATAC	75	1.4551915E-11	46.666668	3
CAGCTAG	30	5.8672007E-4	46.666664	19
TGCTACA	30	5.8672007E-4	46.666664	22
GGATTGT	30	5.8672007E-4	46.666664	13
AGAGATA	30	5.8672007E-4	46.666664	33
GTCTACA	35	0.001253178	40.0	1
TCTCGTA	1395	0.0	35.62724	38
CGTATGC	1435	0.0	35.609753	41
TATGCCG	1435	0.0	35.609753	43
TCGTATG	1435	0.0	35.609753	40
CTCGTAT	1430	0.0	35.48951	39
CTTGAAA	1425	0.0	35.368423	57
TCTGCTT	1425	0.0	35.368423	53
GTATGCC	1445	0.0	35.36332	42