SRR1780178_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780178_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	343870
Sequences flagged as poor quality	0
Sequence length	76
%GC	63

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	7329	2.131328699799343	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	2106	0.6124407479570768	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	1881	0.5470090441155088	No Hit
CACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTTCTG	1759	0.5115305202547474	RNA PCR Primer, Index 32 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	479	0.1392968272893826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTGT	15	0.0022235748	70.00001	49
TCTTTAT	95	0.0	55.26316	1
GTATGTA	20	0.0069479146	52.5	1
CTTTATA	105	0.0	49.999996	2
TTTATAC	130	0.0	43.076923	3
TTGAAAA	1780	0.0	37.55618	58
CTTGAAA	1805	0.0	37.22992	57
GAAAAAA	1820	0.0	37.115387	60
TATGCCG	1880	0.0	37.047874	43
GTATGCC	1900	0.0	36.842106	42
TGAAAAA	1810	0.0	36.74033	59
CGTATGC	1910	0.0	36.649216	41
TCGTATG	1915	0.0	36.553528	40
CTCGTAT	1890	0.0	36.48148	39
GCTTGAA	1875	0.0	36.213333	56
TCTGCTT	1895	0.0	36.200527	53
TGCTTGA	1885	0.0	36.021217	55
TTCTGCT	1925	0.0	36.0	52
TCTTCTG	1910	0.0	35.91623	50
GTCTTCT	1910	0.0	35.91623	49