SRR1780175_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780175_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606744
Sequences flagged as poor quality	0
Sequence length	50
%GC	63

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGT	19678	3.2432129530741136	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	6027	0.9933349155492268	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCG	4937	0.8136874859907969	No Hit
CACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTTCTG	3608	0.5946494732539588	Illumina PCR Primer Index 1 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	1056	0.17404374826945138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	110	0.0	42.00362	2
TCTTTAT	130	0.0	35.614914	1
TCTTCTG	555	0.0	33.297424	44
CCGTCTT	555	0.0	33.297424	41
TTACTTC	40	1.819565E-5	32.997406	29
GTCTTCT	570	0.0	32.421177	43
ATGCCGT	2955	0.0	31.790304	44
TTAATAC	35	3.2143632E-4	31.431278	3
CGGCTTA	35	3.2174724E-4	31.4261	25
CGTCTTC	610	0.0	30.655853	42
GTTAATA	45	4.063851E-5	29.335861	2
TAGCGAG	30	0.0057449955	29.331024	28
TATGCCG	3355	0.0	27.868958	43
ACAGTAG	40	7.0313E-4	27.497837	11
ACACACG	40	7.0313E-4	27.497837	30
TTATCAA	40	7.0313E-4	27.497837	32
TATAGAG	40	7.0313E-4	27.497837	7
AATAGAC	40	7.0313E-4	27.497837	19
CTTAATA	65	5.918555E-7	27.079256	2
TTTATAC	190	0.0	26.633873	3