Basic Statistics
Measure | Value |
---|---|
Filename | SRR1780174_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 284932 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 59 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAGAGT | 20 | 7.9184014E-5 | 70.0 | 23 |
CAGAGTA | 20 | 7.9184014E-5 | 70.0 | 24 |
ATTCGCG | 20 | 0.0069466983 | 52.5 | 62 |
TCTAACG | 20 | 0.0069466983 | 52.5 | 11 |
GTTATTG | 20 | 0.0069466983 | 52.5 | 34 |
TAGTAAA | 20 | 0.0069466983 | 52.5 | 33 |
AATTATC | 35 | 0.0012541797 | 40.0 | 30 |
CATTTCC | 45 | 9.184484E-5 | 38.888885 | 49 |
TTCCGTT | 50 | 1.707262E-4 | 35.000004 | 21 |
AATTTCA | 40 | 0.0024163907 | 35.0 | 16 |
AGAGTAC | 40 | 0.0024163907 | 35.0 | 25 |
GAAAGCA | 40 | 0.0024163907 | 35.0 | 33 |
AGATTGC | 40 | 0.0024163907 | 35.0 | 27 |
CTGCACT | 55 | 2.9878467E-4 | 31.81818 | 4 |
AGTGCGA | 45 | 0.0043030772 | 31.111109 | 10 |
CAATATA | 45 | 0.0043030772 | 31.111109 | 36 |
TAACTCT | 45 | 0.0043030772 | 31.111109 | 13 |
ATTTCCG | 45 | 0.0043030772 | 31.111109 | 50 |
TCTTAGG | 60 | 4.975E-4 | 29.166666 | 2 |
GAGTCTC | 50 | 0.0072014113 | 28.000002 | 35 |