SRR1780174_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780174_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	284932
Sequences flagged as poor quality	0
Sequence length	76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	6908	2.4244381115494225	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	2090	0.7335083458509399	No Hit
CACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTTCTG	1885	0.6615613549899625	RNA PCR Primer, Index 47 (96% over 25bp)
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	1724	0.6050566450942682	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	404	0.14178821613577977	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAAAGAT	15	0.0022231825	70.0	69
CTATTTG	15	0.0022231825	70.0	15
CTTTATA	40	1.0633812E-8	61.25	2
CTTAATA	30	8.363992E-6	58.333332	1
TTAATAC	25	2.387975E-4	56.000004	2
CATCGAT	25	2.387975E-4	56.000004	29
CTTTTCG	20	0.0069466983	52.5	48
AATATGT	20	0.0069466983	52.5	41
CATTAAG	20	0.0069466983	52.5	48
ACTTTTC	20	0.0069466983	52.5	47
TAGTAAC	20	0.0069466983	52.5	31
TCTTTAT	50	6.179471E-8	49.000004	1
TTTATAC	65	4.852973E-7	37.69231	3
TATGCCG	1640	0.0	33.292683	43
CTTGAAA	1600	0.0	33.250004	57
GTATGCC	1650	0.0	33.090908	42
TTGAAAA	1620	0.0	33.055553	58
CGTATGC	1655	0.0	32.990936	41
TCGTATG	1665	0.0	32.792793	40
CTCGTAT	1665	0.0	32.58258	39