SRR1780172_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780172_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	134312
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	6974	5.192387873012091	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	2387	1.7772053130025611	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTTCTG	1420	1.057239859431771	RNA PCR Primer, Index 18 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	1337	0.9954434451128715	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	435	0.3238727738400143	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	263	0.19581273452856035	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	248	0.18464470784442194	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	191	0.14220620644469592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGACGT	15	0.0022206167	70.0	23
CCGGGGG	20	0.006938743	52.5	14
TGAGTCG	20	0.006938743	52.5	66
GGGCATA	20	0.006938743	52.5	39
TGAATTA	20	0.006938743	52.5	19
GATTATC	20	0.006938743	52.5	50
TCGAAAT	20	0.006938743	52.5	70
AACTCGT	55	2.2610038E-9	50.90909	37
TCTTTAT	85	1.8189894E-12	45.29412	1
CCTTTAA	55	1.3010504E-7	44.545452	1
ACACAAG	40	4.5730583E-5	43.75	27
CGGAACT	65	9.911673E-9	43.076927	34
CCGGAAC	65	9.911673E-9	43.076927	33
ATCGTAT	50	3.4578989E-6	42.0	39
CGTCAGA	35	0.0012518136	40.0	2
ACTCGTA	80	1.4060788E-9	39.375	38
CCTTATC	45	9.158561E-5	38.888885	17
CTCTCCA	45	9.158561E-5	38.888885	9
CTTTATA	100	7.2759576E-12	38.5	2
GCCGGAA	85	2.5429472E-9	37.058826	32