SRR1780168_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780168_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	268373
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	10268	3.826018265622846	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	3016	1.123809026988557	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2660	0.9911578288426929	No Hit
CACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTTCTG	2294	0.8547804734455403	RNA PCR Primer, Index 34 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	685	0.25524177171324985	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	339	0.126316730818674	RNA PCR Primer, Index 24 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	334	0.12445365219302985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTTATA	20	7.917565E-5	70.0	3
GATATTA	15	0.0022230414	70.0	1
GCATATC	25	2.3877245E-4	55.999996	35
GATCTTA	20	0.0069462606	52.5	20
TCTTTAT	115	0.0	48.695656	1
CTTTATA	115	0.0	48.695656	2
ATCGTAT	30	5.871306E-4	46.666664	39
ATATCGT	30	5.871306E-4	46.666664	37
TATGTCA	40	4.5853507E-5	43.75	52
CAACCGT	35	0.0012540497	40.0	9
CAGCTTA	35	0.0012540497	40.0	1
ATCGGTT	35	0.0012540497	40.0	25
CAATACG	35	0.0012540497	40.0	69
ACCGTAT	45	9.183056E-5	38.888885	11
AGCGTCA	60	1.2130809E-5	35.0	3
TTCCCTA	40	0.0024161413	35.0	24
CTTATAT	50	1.7069984E-4	35.0	1
AGCATGA	40	0.0024161413	35.0	45
TAAGCGC	40	0.0024161413	35.0	47
TATCGGC	40	0.0024161413	35.0	15