SRR1780157_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780157_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	328243
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	20082	6.118028411877786	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12665	3.858421961778317	No Hit
CATATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	8086	2.463418869557005	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCG	3529	1.075118128947152	No Hit
CATAAACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	2291	0.6979585246296189	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	2021	0.6157023912162636	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCC	993	0.30251977955356246	No Hit
CAAATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	768	0.23397300170909965	No Hit
CTAATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	691	0.2105147710689946	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCC	488	0.14867034483599043	No Hit
CAAAAACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGT	465	0.14166334087855642	No Hit
ATACACATCTCCGAGCCCACGAGACGCATGTACATCTCGTATGCCGTCTT	387	0.11790045789247601	RNA PCR Primer, Index 39 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCGAA	15	0.0022205485	70.023315	26
TACGGTT	15	0.0022245788	69.99132	43
ACGCTAT	15	0.0022245788	69.99132	34
AGGGGGG	4345	0.0	65.73259	70
TAAGCCG	125	0.0	61.592358	43
AAGCCGT	135	0.0	59.622234	44
CATATAC	1295	0.0	57.03733	1
GCCGTCA	535	0.0	56.90883	46
CCGTCTT	4740	0.0	56.554165	47
CGTCTTC	4665	0.0	56.421745	48
TATGCCG	5360	0.0	56.41091	43
CGTATGC	5410	0.0	56.40705	41
ATGCCGT	5330	0.0	56.400135	44
GCCGTCT	4810	0.0	56.385933	46
TCGTATG	5390	0.0	56.35664	40
GTATGCC	5390	0.0	56.291714	42
CTCGTAT	5400	0.0	56.25228	39
TGCCGTC	5245	0.0	56.246597	45
ATCTCGT	5470	0.0	56.236168	37
TCTCGTA	5485	0.0	56.146183	38