SRR1780146_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780146_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	239804
Sequences flagged as poor quality	0
Sequence length	76
%GC	69

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	95468	39.81084552384447	No Hit
CTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTG	7472	3.1158779670063885	No Hit
TCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGT	645	0.2689696585544862	No Hit
CTCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGG	493	0.20558456072459175	No Hit
ATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTGGTC	410	0.1709729612516889	Illumina Single End PCR Primer 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGAATT	15	0.002223435	69.994576	22
TGTGCGC	25	2.388124E-4	55.995663	3
GCCGTAT	940	0.0	54.35749	54
TCGCCGT	950	0.0	53.78531	52
GATCTCG	965	0.0	53.31193	41
TGGTCGC	965	0.0	53.31193	49
CCGTATC	960	0.0	53.225044	55
GTCGCCG	975	0.0	53.124092	51
GGTGGTC	975	0.0	53.124092	47
TCTCGGT	990	0.0	53.02619	43
TCGGTGG	990	0.0	53.02619	45
GTAGATC	980	0.0	52.864075	38
CGCCGTA	975	0.0	52.76515	53
CTCGGTG	990	0.0	52.672684	44
AGATCTC	985	0.0	52.58476	40
ATCTCGG	980	0.0	52.495937	42
GATACTA	20	0.006947492	52.495934	1
GTACCAG	20	0.006947492	52.495934	1
CATTGTG	20	0.006947492	52.495934	15
GTCTCGG	20	0.006947492	52.495934	42