SRR1780145_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780145_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	154079
Sequences flagged as poor quality	0
Sequence length	76
%GC	82

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	95258	61.82412918048533	No Hit
CTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTG	6952	4.511971131692183	No Hit
TCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGT	597	0.3874635738809312	No Hit
ATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTGGTC	439	0.28491877543338157	Illumina Single End PCR Primer 1 (95% over 22bp)
CTCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGG	438	0.2842697577216882	No Hit
TCTTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGG	199	0.12915452462697707	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	192	0.1246114006451236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAATA	15	0.0022212388	70.0	1
CGACGAC	15	0.0022212388	70.0	22
GGTCAGT	15	0.0022212388	70.0	50
TGTGCGC	35	3.6852725E-9	70.0	3
TTTATAC	20	7.906877E-5	70.0	3
CTTTATA	20	7.906877E-5	70.0	2
ATGTTAA	15	0.0022212388	70.0	1
CTCTAGT	15	0.0022212388	70.0	1
GCATCCG	15	0.0022212388	70.0	21
TGCGCGT	45	5.456968E-12	69.99999	5
AAAAAGG	825	0.0	58.545452	70
CGCTGGC	30	8.345836E-6	58.333332	16
CTATACA	25	2.3845205E-4	55.999996	1
TGTGCGG	25	2.3845205E-4	55.999996	3
GTGTGCG	25	2.3845205E-4	55.999996	2
TTGTGCG	45	2.6830094E-8	54.444443	2
GCCGTAT	1045	0.0	53.923447	54
CGCCGTA	1050	0.0	53.666668	53
TCTGGCG	85	0.0	53.52941	11
TCGCCGT	1040	0.0	53.509613	52