SRR1780144_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780144_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177181
Sequences flagged as poor quality	0
Sequence length	76
%GC	79

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	100995	57.0010328421219	No Hit
CTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTG	6761	3.8158719050011003	No Hit
TCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGT	601	0.33920115588014516	No Hit
ATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTGGTC	415	0.23422375988396046	Illumina Single End PCR Primer 1 (95% over 22bp)
CTCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGG	382	0.21559873801366963	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	215	0.12134483945795542	No Hit
TCTTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGG	196	0.11062134201748496	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTACA	15	0.0022220393	69.998024	36
TATGCGC	15	0.0022220393	69.998024	3
TCGTGCT	15	0.0022220393	69.998024	47
TACTGTA	15	0.0022220393	69.998024	5
GGGCCCC	15	0.0022220393	69.998024	69
TGTGCGC	40	1.0604708E-8	61.248272	3
CTTTATA	40	1.0604708E-8	61.248272	2
TGCGGGT	35	2.962097E-7	59.99831	5
GCGCGTC	55	3.6379788E-11	57.271107	6
CGCGTCT	55	3.6379788E-11	57.271107	7
GGGCGCT	25	2.3858332E-4	55.99842	13
GATTGGC	25	2.3858332E-4	55.99842	10
TATACGC	25	2.3858332E-4	55.99842	3
TTATATC	20	0.006935408	52.51334	30
CGGCGTG	20	0.0069431574	52.498516	53
CGTGCTC	20	0.0069431574	52.498516	48
CTTTTCT	20	0.0069431574	52.498516	37
ATGTGAC	20	0.0069431574	52.498516	40
TCGGCGT	20	0.0069431574	52.498516	52
TGTGACA	20	0.0069431574	52.498516	41