SRR1780138_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780138_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69272
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19310	27.875620741425106	No Hit
CTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGTG	6981	10.077664857373831	No Hit
TCTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGT	630	0.9094583670169765	No Hit
ATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGTGGTC	457	0.6597182122646957	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGG	299	0.4316318281556762	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGG	234	0.33779882203487704	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	86	0.12414828502136505	No Hit
CTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGTGG	85	0.12270470031181428	No Hit
CTTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGT	80	0.11548677676406051	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	15	0.0022160618	70.0	4
TATGGGC	20	7.876203E-5	70.0	3
GGCGCTG	15	0.0022160618	70.0	14
TCTGGCG	15	0.0022160618	70.0	11
AGTGTAG	30	8.297577E-6	58.333332	35
AGCCGAC	25	2.3753263E-4	55.999996	19
CGAGGAA	25	2.3753263E-4	55.999996	25
CAGTGTA	25	2.3753263E-4	55.999996	34
ACGAGGA	25	2.3753263E-4	55.999996	24
AAAAAGG	575	0.0	55.391308	70
TTTATAC	45	2.6542693E-8	54.444447	3
GCAAGAG	20	0.0069246185	52.5	69
AGAAGTT	20	0.0069246185	52.5	50
TGGCGCT	20	0.0069246185	52.5	13
TTCCAGG	20	0.0069246185	52.5	1
GGCGGTG	20	0.0069246185	52.5	14
GCGTCTG	20	0.0069246185	52.5	8
AGGGACA	20	0.0069246185	52.5	27
AGAGCTA	20	0.0069246185	52.5	8
CGTATCA	1075	0.0	52.418602	56