SRR1780134_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780134_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227856
Sequences flagged as poor quality	0
Sequence length	76
%GC	65

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	72457	31.79946984060108	No Hit
CTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGTG	6242	2.73944947686258	No Hit
TCTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGT	527	0.23128642651499193	No Hit
ATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGGTGGTC	450	0.1974931535706762	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGG	328	0.14395056526929287	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGGCAACCTGTGTAGATCTCGG	237	0.10401306088055613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACATGA	15	0.0022208686	70.013824	17
CTACATG	15	0.0022208686	70.013824	16
TCGCCGT	975	0.0	55.280838	52
GCCGTAT	975	0.0	55.280838	54
GTCGCCG	995	0.0	54.873165	51
TGGTCGC	990	0.0	54.79678	49
CGCCGTA	985	0.0	54.719612	53
CCGTATC	985	0.0	54.36429	55
ATCTCGG	990	0.0	53.7362	42
CGTATCA	1000	0.0	53.548824	56
CGGTGGT	1000	0.0	53.548824	46
GTATCAT	975	0.0	53.486004	57
TAGATCT	1010	0.0	53.36517	39
GTAGATC	1025	0.0	53.267124	38
CATTAAA	980	0.0	53.21312	61
TCGGTGG	1000	0.0	53.19883	45
TCTCGGT	995	0.0	53.11441	43
AGATCTC	1005	0.0	52.934166	40
GATCTCG	1005	0.0	52.934166	41
CTCGGTG	1000	0.0	52.84884	44